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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
41
DNase-seq
Assay category
58
DNA binding
41
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
34
June, 2019
4
October, 2019
3
November, 2018
Available data
795
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
99
Homo sapiens
Biosample type
58
cell line
39
tissue
2
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
99
AMP
Genome assembly (visualization)
99
hg19
85
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
muscle of arm
17
muscle of leg
13
liver
2
tibial artery
2
tibial nerve
2
+ See 3 more…
primary cell
hepatic stellate cell
1
hepatocyte
1
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