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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
11
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
73
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
68
histone
68
histone modification
43
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
39
May, 2019
35
October, 2019
7
June, 2019
4
November, 2017
2
July, 2019
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
87
Homo sapiens
Biosample type
62
tissue
25
primary cell
Organ
365
liver
131
brain
104
kidney
100
pancreas
94
heart
87
vasculature
84
limb
83
blood vessel
80
epithelium
60
musculature of body
54
blood
54
bodily fluid
30
connective tissue
26
nerve
25
artery
18
ureter
15
vein
13
spleen
11
adipose tissue
6
eye
Project
87
AMP
Genome assembly (visualization)
86
hg19
82
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
tibial artery
18
2
ascending aorta
13
1
thoracic aorta
12
aorta
11
coronary artery
3
2
primary cell
endothelial cell of umbilical vein
12
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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