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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
44
ChIP-seq
7
single cell RNA-seq
2
ATAC-seq
Assay category
208
DNA accessibility
44
DNA binding
7
Transcription
Target of assay
42
histone
42
histone modification
26
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
41
August, 2017
10
November, 2018
9
October, 2019
6
February, 2021
4
October, 2017
1
March, 2019
1
November, 2020
September, 2018
Available data
2928
bam
2763
bigWig
1574
tsv
1458
bed narrowPeak
961
fastq
716
bigBed narrowPeak
320
tagAlign
273
bed bed3+
252
bed broadPeak
221
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
3
cool
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
253
Homo sapiens
Biosample type
213
tissue
44
primary cell
1
cell line
1
in vitro differentiated cells
Organ
83
kidney
46
musculature of body
36
limb
35
brain
30
heart
21
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
6
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
228
hg19
227
GRCh38
Lab
257
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
audit script error
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
files.file_type!
ibed
month_released!
November, 2017
September, 2018
BIOSAMPLE
ASSAY
259 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
heart
18
kidney
13
5
brain
14
3
muscle of arm
17
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 19 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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