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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
8
single cell RNA-seq
5
Hi-C
2
ATAC-seq
Assay category
29
DNA binding
8
Transcription
5
3D chromatin structure
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
10
narrow histone mark
4
transcription factor
Date released
20
August, 2017
7
November, 2017
6
February, 2021
4
July, 2019
3
October, 2019
1
March, 2019
1
November, 2018
1
October, 2017
1
September, 2018
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
44
Homo sapiens
Biosample type
29
tissue
8
primary cell
7
cell line
Organ
13
musculature of body
9
pancreas
8
liver
5
kidney
4
blood vessel
4
brain
4
epithelium
4
vasculature
2
connective tissue
2
vein
1
adipose tissue
Project
44
AMP
Genome assembly (visualization)
35
hg19
2
GRCh38
Lab
42
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
audit script error
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
month_released!
March, 2023
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
kidney
5
cingulate gyrus
1
liver
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
cell line
HepG2
6
Panc1
1
See all biosamples
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