Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
50
ChIP-seq
7
single cell RNA-seq
2
ATAC-seq
Assay category
188
DNA accessibility
50
DNA binding
7
Transcription
Target of assay
47
histone
47
histone modification
26
broad histone mark
21
narrow histone mark
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
172
June, 2019
41
August, 2017
8
November, 2017
7
November, 2018
5
February, 2021
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
1
September, 2018
Available data
2420
bam
2270
bigWig
1275
tsv
1244
bed narrowPeak
651
fastq
623
bigBed narrowPeak
309
tagAlign
244
bed bed3+
238
bed broadPeak
201
bigBed broadPeak
161
txt
73
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
16
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
7
csv
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
215
tissue
28
primary cell
1
cell line
1
in vitro differentiated cells
Organ
83
kidney
liver
47
brain
46
musculature of body
36
limb
30
heart
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
245
AMP
Genome assembly (visualization)
220
hg19
214
GRCh38
Lab
243
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
audit script error
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
organ_slims!
epithelium
liver
BIOSAMPLE
ASSAY
245 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
heart
18
kidney
13
5
brain
14
3
muscle of arm
17
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
pancreatic cell
2
astrocyte of the hippocampus
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download