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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
16
DNase-seq
6
WGBS
Assay category
147
Transcription
74
DNA binding
48
DNA accessibility
6
DNA methylation
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
14
June, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
4
October, 2019
3
August, 2018
2
October, 2018
1
June, 2018
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
0
ibed
Organism
275
Homo sapiens
Biosample type
256
primary cell
19
in vitro differentiated cells
Organ
482
pancreas
467
liver
275
epithelium
109
connective tissue
78
kidney
60
blood
60
bodily fluid
57
brain
48
musculature of body
46
adipose tissue
36
limb
30
heart
27
embryo
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
4
vein
2
nerve
Project
206
AMP
69
HPAP
Genome assembly (visualization)
197
GRCh38
185
hg19
Lab
206
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
275 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
+ See 16 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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