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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
108
ChIP-seq
3
Hi-C
2
ATAC-seq
Assay category
197
DNA accessibility
108
DNA binding
3
3D chromatin structure
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
4
October, 2019
2
July, 2019
1
March, 2019
1
November, 2020
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
302
Homo sapiens
Biosample type
208
tissue
60
cell line
39
primary cell
1
in vitro differentiated cells
Organ
78
kidney
64
liver
50
brain
46
musculature of body
36
limb
30
heart
24
epithelium
22
pancreas
vasculature
18
ureter
15
blood vessel
11
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
308
AMP
Genome assembly (visualization)
285
hg19
268
GRCh38
Lab
306
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
files.file_type!
bed bedgraph
organ_slims!
vasculature
BIOSAMPLE
ASSAY
308 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
cardiac fibroblast
3
brain pericyte
1
1
glomerular visceral epithelial cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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