Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
2
ATAC-seq
Assay category
5
3D chromatin structure
2
DNA accessibility
Date released
4
July, 2019
1
March, 2019
1
October, 2017
1
October, 2019
Available data
3381
bam
3164
bigWig
1812
bed narrowPeak
1600
tsv
1347
fastq
1037
bigBed narrowPeak
tagAlign
322
bed broadPeak
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
tissue
1
cell line
Organ
3
brain
3
pancreas
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
Project
7
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
5
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
tagAlign
month_released!
September, 2017
BIOSAMPLE
ASSAY
7 results
search-icon
table-tab-icon
Clear Filters
Hi-C
ATAC-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
islet of Langerhans
2
cell line
Panc1
1
Download