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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
16
ChIP-seq
5
Hi-C
Assay category
195
DNA accessibility
16
DNA binding
5
3D chromatin structure
Target of assay
28
histone
28
histone modification
16
broad histone mark
narrow histone mark
Date released
187
June, 2019
12
August, 2017
10
October, 2019
4
July, 2019
2
November, 2017
1
November, 2020
Available data
2987
bam
2717
bigWig
1590
tsv
1376
bed narrowPeak
fastq
893
bigBed narrowPeak
293
bed broadPeak
271
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
Organism
216
Homo sapiens
Biosample type
181
tissue
33
primary cell
2
cell line
Organ
78
kidney
41
musculature of body
36
limb
35
brain
30
heart
20
epithelium
18
ureter
15
vasculature
13
blood vessel
10
pancreas
8
connective tissue
4
artery
4
eye
4
vein
3
liver
2
nerve
1
adipose tissue
Project
216
AMP
Genome assembly (visualization)
198
GRCh38
193
hg19
Lab
216
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
fastq
lab.title!
Bing Ren, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
216 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 40 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 18 more…
cell line
Panc1
1
1
See all biosamples
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