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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
51
ChIP-seq
2
ATAC-seq
2
Hi-C
Assay category
174
DNA accessibility
51
DNA binding
2
3D chromatin structure
Target of assay
51
histone
51
histone modification
transcription factor
30
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
39
August, 2017
14
November, 2017
7
November, 2018
6
October, 2019
1
July, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2647
bam
2439
bigWig
1574
tsv
1135
bed narrowPeak
886
fastq
500
bigBed narrowPeak
271
tagAlign
225
bed broadPeak
217
bed bed3+
197
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
22
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
221
Homo sapiens
Biosample type
177
tissue
33
primary cell
16
cell line
1
in vitro differentiated cells
Organ
78
kidney
brain
46
musculature of body
36
limb
30
heart
22
epithelium
22
pancreas
20
liver
18
ureter
17
vasculature
14
blood vessel
11
connective tissue
4
artery
4
eye
vein
3
adipose tissue
2
nerve
1
spleen
Project
227
AMP
Genome assembly (visualization)
213
hg19
202
GRCh38
Lab
225
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
3
inconsistent assembly
organ_slims!
brain
vein
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
227 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 29 more…
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 13 more…
cell line
HepG2
14
Panc1
1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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