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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
2
ATAC-seq
2
pCHi-C
Assay category
35
DNA binding
2
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
26
August, 2017
6
November, 2017
4
October, 2017
2
March, 2020
1
March, 2019
Available data
3392
bam
3157
bigWig
1813
bed narrowPeak
1600
tsv
1351
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
bigBed broadPeak
271
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
33
Homo sapiens
Biosample type
37
tissue
2
in vitro differentiated cells
Organ
14
pancreas
13
musculature of body
9
brain
1
adipose tissue
1
connective tissue
Project
39
AMP
Genome assembly (visualization)
38
hg19
15
GRCh38
Lab
37
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
lab.title!
Struan F.A. Grant, CHOP
month_released!
August, 2020
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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