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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
1
ATAC-seq
Assay category
84
DNA binding
1
DNA accessibility
Target of assay
74
histone
74
histone modification
44
broad histone mark
30
narrow histone mark
10
control
Date released
66
August, 2017
11
November, 2017
8
October, 2017
Available data
bam
2866
bigWig
1684
bed narrowPeak
1427
tsv
1357
fastq
1042
bigBed narrowPeak
321
bed broadPeak
308
tagAlign
285
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
tagAlign bed3+
1
vcf
Organism
85
Homo sapiens
Biosample type
71
tissue
14
in vitro differentiated cells
Organ
22
connective tissue
20
liver
18
brain
15
musculature of body
10
pancreas
8
adipose tissue
Project
85
AMP
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
84
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
March, 2019
May, 2021
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
tissue
liver
20
skeletal muscle tissue
15
islet of Langerhans
9
1
subcutaneous abdominal adipose tissue
8
brain
7
+ See 4 more…
in vitro differentiated cells
adipocyte
14
See all biosamples
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