Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
2
ATAC-seq
Assay category
61
DNA binding
2
DNA accessibility
Target of assay
control
57
histone
57
histone modification
35
broad histone mark
22
narrow histone mark
4
transcription factor
Date released
37
August, 2017
16
November, 2017
7
October, 2017
2
October, 2019
1
March, 2019
Available data
3146
bigWig
3086
bam
bed narrowPeak
1597
tsv
1190
fastq
1042
bigBed narrowPeak
330
tagAlign
322
bed broadPeak
285
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
63
Homo sapiens
Biosample type
43
tissue
12
in vitro differentiated cells
6
cell line
2
primary cell
Organ
23
liver
18
connective tissue
16
brain
6
adipose tissue
4
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
63
AMP
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
61
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
63 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
17
brain
6
subcutaneous abdominal adipose tissue
6
cingulate gyrus
5
islet of Langerhans
2
2
+ See 3 more…
in vitro differentiated cells
adipocyte
12
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
See all biosamples
Download