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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
2
DNase-seq
Assay category
58
DNA binding
2
DNA accessibility
Target of assay
74
histone
74
histone modification
45
broad histone mark
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
101
November, 2017
60
August, 2017
49
May, 2021
23
May, 2020
18
October, 2019
15
August, 2021
13
October, 2017
9
November, 2018
8
February, 2021
1
March, 2019
1
November, 2020
Available data
235
fastq
230
bam
212
bigWig
92
bed narrowPeak
89
tsv
56
tagAlign
30
bigBed narrowPeak
27
bed bed3+
26
bed broadPeak
10
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
55
Homo sapiens
Biosample type
39
tissue
11
in vitro differentiated cells
10
primary cell
Organ
16
connective tissue
14
liver
10
musculature of body
10
pancreas
5
adipose tissue
Project
60
AMP
Genome assembly (visualization)
27
hg19
12
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
2
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
DNase-seq
tissue
liver
14
skeletal muscle tissue
10
islet of Langerhans
5
pancreas
5
subcutaneous abdominal adipose tissue
5
in vitro differentiated cells
adipocyte
10
1
primary cell
skeletal muscle myoblast
9
1
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