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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
Assay category
151
DNA binding
Target of assay
329
histone
329
histone modification
178
narrow histone mark
151
broad histone mark
68
control
58
transcription factor
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
45
August, 2017
44
May, 2021
43
November, 2017
10
October, 2017
7
August, 2021
2
October, 2019
Available data
427
bigWig
420
bed narrowPeak
378
bam
242
bigBed narrowPeak
147
tagAlign
118
fastq
36
bed broadPeak
16
bigBed broadPeak
12
bed bed3+
Organism
147
Homo sapiens
Biosample type
76
tissue
53
primary cell
14
in vitro differentiated cells
8
cell line
Organ
45
brain
20
liver
12
connective tissue
8
musculature of body
8
pancreas
4
adipose tissue
3
epithelium
2
blood vessel
2
vasculature
2
vein
Project
107
AMP
44
T1D
Genome assembly (visualization)
104
GRCh38
89
hg19
Lab
107
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent assembly
organ_slims!
lymph node
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
tissue
liver
11
brain
10
caudate nucleus
8
layer of hippocampus
8
skeletal muscle tissue
8
+ See 6 more…
primary cell
monocyte
44
skeletal muscle myoblast
6
endothelial cell of umbilical vein
2
hepatocyte
1
in vitro differentiated cells
adipocyte
8
neural progenitor cell
6
cell line
HepG2
8
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