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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
109
ChIP-seq
2
ATAC-seq
Assay category
193
DNA accessibility
109
DNA binding
Target of assay
62
histone
62
histone modification
47
transcription factor
34
broad histone mark
28
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
176
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
4
October, 2019
1
March, 2019
1
November, 2020
Available data
3200
bam
3008
bigWig
1651
bed narrowPeak
1527
tsv
1352
fastq
953
bigBed narrowPeak
392
tagAlign
301
bed broadPeak
264
bigBed broadPeak
256
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
296
Homo sapiens
Biosample type
206
tissue
59
cell line
36
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
48
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
302
AMP
Genome assembly (visualization)
279
hg19
264
GRCh38
Lab
300
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
eye
vasculature
BIOSAMPLE
ASSAY
302 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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