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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
46
total RNA-seq
Assay category
70
DNA binding
46
Transcription
Target of assay
47
transcription factor
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
559
February, 2021
189
May, 2020
187
June, 2019
173
May, 2021
164
July, 2018
130
August, 2017
123
August, 2021
70
November, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
25
October, 2019
20
November, 2019
16
February, 2023
15
February, 2018
9
December, 2019
9
November, 2018
5
January, 2019
5
November, 2020
4
October, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2019
Available data
523
bam
437
bigWig
397
fastq
396
bed narrowPeak
326
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
46
tsv
3
tar
2
bedpe bed3+
2
hic
1
csv
Organism
116
Homo sapiens
Biosample type
59
cell line
32
primary cell
25
tissue
Organ
58
liver
46
pancreas
31
epithelium
12
brain
4
vasculature
2
blood vessel
Project
116
AMP
Genome assembly (visualization)
116
hg19
101
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
58
EndoC_BH1
1
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
4
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
+ See 2 more…
tissue
islet of Langerhans
19
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
substantia nigra
1
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