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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
total RNA-seq
76
single cell RNA-seq
22
DNase-seq
6
ChIP-seq
6
WGBS
1
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
214
Transcription
23
DNA accessibility
6
DNA binding
6
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
84
February, 2021
33
April, 2018
33
July, 2018
26
September, 2018
18
June, 2019
9
July, 2019
9
October, 2019
6
August, 2021
6
December, 2019
6
May, 2021
5
March, 2020
4
November, 2017
3
August, 2018
3
February, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
472
bam
429
bigWig
264
bed narrowPeak
257
fastq
223
tsv
139
bigBed narrowPeak
80
zippedFastqFolder
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
13
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
7
hic
6
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
251
Homo sapiens
Biosample type
140
primary cell
87
cell line
22
tissue
2
in vitro differentiated cells
Organ
488
connective tissue
438
pancreas
404
adipose tissue
237
liver
198
heart
178
epithelium
102
kidney
85
vasculature
81
blood vessel
73
brain
62
artery
58
bone element
55
musculature of body
43
limb
18
ureter
14
embryo
9
eye
7
nerve
4
vein
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
243
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
229
GRCh38
226
hg19
Lab
245
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
single cell RNA-seq
DNase-seq
ChIP-seq
WGBS
ATAC-seq
RNA microarray
pCHi-C
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 19 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
tissue
aorta
1
4
1
ascending aorta
2
1
coronary artery
1
2
tibial artery
1
2
pigmented layer of retina
2
+ See 3 more…
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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