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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
113
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
266
DNA accessibility
113
DNA binding
52
Transcription
41
DNA methylation
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
186
June, 2019
134
May, 2022
70
November, 2017
40
August, 2017
19
September, 2020
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2934
bam
2724
bigWig
1801
bed narrowPeak
1314
fastq
1155
tsv
1032
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
283
bigBed broadPeak
267
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
13
hic
12
bed bed3
10
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
466
Homo sapiens
Biosample type
210
tissue
202
primary cell
59
cell line
1
in vitro differentiated cells
Organ
102
epithelium
101
pancreas
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
adipose tissue
2
nerve
1
spleen
Project
319
AMP
153
HPAP
Genome assembly (visualization)
295
hg19
280
GRCh38
Lab
317
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
March, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
472 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
+ See 22 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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