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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 105ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 105DNA binding
Target of assay
  • 58histone
  • 58histone modification
  • 47transcription factor
  • 34broad histone mark
  • 24narrow histone mark
  • 7RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 63November, 2017
  • 39August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3286bam
  • 3068bigWig
  • 1726bed narrowPeak
  • 1600tsv
  • 1252fastq
  • 990bigBed narrowPeak
  • 397tagAlign
  • 313bed broadPeak
  • 277bigBed broadPeak
  • 261bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 308Homo sapiens
Biosample type
  • 212tissue
  • 56cell line
  • 44primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 60liver
  • 46musculature of body
  • 43brain
  • 36limb
  • 30heart
  • 20epithelium
  • 20pancreas
  • 18ureter
  • 15vasculature
  • 12blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 313AMP
Genome assembly (visualization)
  • 289hg19
  • 273GRCh38
Lab
  • 311AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

313 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG255
Panc11
primary cell
skeletal muscle myoblast112
endothelial cell of umbilical vein22
cardiac fibroblast3
brain microvascular endothelial cell11
choroid plexus epithelial cell11
in vitro differentiated cells
adipocyte1
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