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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 108ChIP-seq
  • 2ATAC-seq
Assay category
  • 207DNA accessibility
  • 108DNA binding
Target of assay
  • 62histone
  • 62histone modification
  • 46transcription factor
  • 34broad histone mark
  • 28narrow histone mark
  • 6RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 66November, 2017
  • 40August, 2017
  • 9November, 2018
  • 9October, 2019
  • 2October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3367bam
  • 3151bigWig
  • 1800bed narrowPeak
  • 1600tsv
  • 1332fastq
  • 1034bigBed narrowPeak
  • 393tagAlign
  • 315bed broadPeak
  • 280bigBed broadPeak
  • 269bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 309Homo sapiens
Biosample type
  • 211tissue
  • 57cell line
  • 46primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 61liver
  • 46musculature of body
  • 43brain
  • 36limb
  • 30heart
  • 21pancreas
  • 20epithelium
  • 18ureter
  • 15vasculature
  • 12blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 315AMP
Genome assembly (visualization)
  • 291hg19
  • 277GRCh38
Lab
  • 313AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 12inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

315 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain141
kidney13
muscle of leg13
cell line
HepG256
Panc11
primary cell
skeletal muscle myoblast13
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
cardiac fibroblast3
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte1
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