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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 99ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 99DNA binding
Target of assay
  • 52histone
  • 52histone modification
  • 47transcription factor
  • 31broad histone mark
  • 21narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 63November, 2017
  • 33August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3376bam
  • 3153bigWig
  • 1802bed narrowPeak
  • 1601tsv
  • 1342fastq
  • 1027bigBed narrowPeak
  • 384tagAlign
  • 307bed broadPeak
  • 274bed bed3+
  • 270bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 301Homo sapiens
Biosample type
  • 213tissue
  • 52cell line
  • 41primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 56liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 307AMP
Genome assembly (visualization)
  • 283hg19
  • 268GRCh38
Lab
  • 305AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY

307 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG251
Panc11
primary cell
skeletal muscle myoblast15
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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