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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 62ChIP-seq
  • 2ATAC-seq
Assay category
  • 207DNA accessibility
  • 62DNA binding
Target of assay
  • 50histone
  • 50histone modification
  • 27broad histone mark
  • 23narrow histone mark
  • 12transcription factor
  • 8RNA binding protein
  • 2chromatin remodeller
Date released
  • 187June, 2019
  • 32August, 2017
  • 26November, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3255bam
  • 3056bigWig
  • 1723bed narrowPeak
  • 1591tsv
  • 1216fastq
  • 978bigBed narrowPeak
  • 382tagAlign
  • 270bed bed3+
  • 269bed broadPeak
  • 232bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 263Homo sapiens
Biosample type
  • 213tissue
  • 40primary cell
  • 15cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 19liver
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 269AMP
Genome assembly (visualization)
  • 245hg19
  • 239GRCh38
Lab
  • 267AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

269 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast5
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
cell line
HepG214
Panc11
in vitro differentiated cells
adipocyte1
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