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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 202DNase-seq
  • 102ChIP-seq
  • 1ATAC-seq
Assay category
  • 203DNA accessibility
  • 102DNA binding
Target of assay
  • 58histone
  • 58histone modification
  • 44transcription factor
  • 30broad histone mark
  • 28narrow histone mark
  • 8RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 64November, 2017
  • 34August, 2017
  • 9October, 2019
  • 7November, 2018
  • 2October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 2832bam
  • 2687bigWig
  • 1534bed narrowPeak
  • 1437tsv
  • 798bigBed narrowPeak
  • 796fastq
  • 387tagAlign
  • 305bed broadPeak
  • 275bigBed broadPeak
  • 259bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 304Homo sapiens
Biosample type
  • 204tissue
  • 53cell line
  • 48primary cell
Organ
  • 78kidney
  • 56liver
  • 46musculature of body
  • 45brain
  • 36limb
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 15pancreas
  • 13blood vessel
  • 9connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 305AMP
Genome assembly (visualization)
  • 281hg19
  • 270GRCh38
Lab
  • 304AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

305 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain132
kidney13
muscle of leg13
cell line
HepG252
Panc11
primary cell
skeletal muscle myoblast13
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
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