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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
DNase-seq
102
ChIP-seq
1
ATAC-seq
Assay category
203
DNA accessibility
102
DNA binding
Target of assay
58
histone
58
histone modification
44
transcription factor
30
broad histone mark
28
narrow histone mark
8
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
34
August, 2017
9
October, 2019
7
November, 2018
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2832
bam
2687
bigWig
1534
bed narrowPeak
1437
tsv
798
bigBed narrowPeak
796
fastq
387
tagAlign
305
bed broadPeak
275
bigBed broadPeak
259
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
304
Homo sapiens
Biosample type
204
tissue
53
cell line
48
primary cell
Organ
78
kidney
56
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
18
ureter
17
vasculature
15
pancreas
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
305
AMP
Genome assembly (visualization)
281
hg19
270
GRCh38
Lab
304
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
305 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
13
2
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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