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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12ChIP-seq
  • 4DNase-seq
  • 1ATAC-seq
Assay category
  • 12DNA binding
  • 5DNA accessibility
Target of assay
  • 7histone
  • 7histone modification
  • 6broad histone mark
  • 5transcription factor
  • 1RNA binding protein
  • 1chromatin remodeller
  • 1narrow histone mark
Date released
  • 7August, 2017
  • 6November, 2017
  • 2November, 2018
  • 2October, 2017
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • 283bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 12Homo sapiens
Biosample type
  • 9tissue
  • 6cell line
  • 1in vitro differentiated cells
  • 1primary cell
Organ
  • 7liver
  • 6pancreas
  • 2brain
  • 1connective tissue
Project
  • 17AMP
Genome assembly (visualization)
  • 17hg19
  • 12GRCh38
Lab
  • 16AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

17 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
pancreas5
brain11
islet of Langerhans1
liver1
cell line
HepG26
in vitro differentiated cells
adipocyte1
primary cell
skeletal muscle myoblast1
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