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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 112ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 112DNA binding
Target of assay
  • 63histone
  • 63histone modification
  • 49transcription factor
  • 35broad histone mark
  • 28narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 68November, 2017
  • 41August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3381bam
  • 3158bigWig
  • 1808bed narrowPeak
  • 1600tsv
  • 1347fastq
  • 1033bigBed narrowPeak
  • 396tagAlign
  • 320bed broadPeak
  • 283bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 314Homo sapiens
Biosample type
  • 213tissue
  • 57cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 61liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 320AMP
Genome assembly (visualization)
  • 296hg19
  • 282GRCh38
Lab
  • 318AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
files.read_length!
  • 25
BIOSAMPLE
ASSAY

320 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG256
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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