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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
32
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
32
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
4
transcription factor
Date released
187
June, 2019
20
August, 2017
10
November, 2017
9
October, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
3134
bam
2954
bigWig
1617
bed narrowPeak
1600
tsv
1094
fastq
894
bigBed narrowPeak
359
tagAlign
236
bed bed3+
229
bed broadPeak
201
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
229
Homo sapiens
Biosample type
195
tissue
29
primary cell
5
cell line
Organ
78
kidney
46
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
13
pancreas
13
vasculature
11
blood vessel
8
connective tissue
6
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
Project
229
AMP
Genome assembly (visualization)
205
hg19
201
GRCh38
Lab
227
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.read_length!
36
BIOSAMPLE
ASSAY
229 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 42 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
HepG2
4
Panc1
1
See all biosamples
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