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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195DNase-seq
  • 32ChIP-seq
  • 2ATAC-seq
Assay category
  • 197DNA accessibility
  • 32DNA binding
Target of assay
  • 28histone
  • 28histone modification
  • 16broad histone mark
  • 12narrow histone mark
  • 4transcription factor
Date released
  • 187June, 2019
  • 20August, 2017
  • 10November, 2017
  • 9October, 2019
  • 1March, 2019
  • 1November, 2020
  • 1October, 2017
Available data
  • 3134bam
  • 2954bigWig
  • 1617bed narrowPeak
  • 1600tsv
  • 1094fastq
  • 894bigBed narrowPeak
  • 359tagAlign
  • 236bed bed3+
  • 229bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 229Homo sapiens
Biosample type
  • 195tissue
  • 29primary cell
  • 5cell line
Organ
  • 78kidney
  • 46musculature of body
  • 36brain
  • 36limb
  • 30heart
  • 18epithelium
  • 18ureter
  • 13pancreas
  • 13vasculature
  • 11blood vessel
  • 8connective tissue
  • 6liver
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
Project
  • 229AMP
Genome assembly (visualization)
  • 205hg19
  • 201GRCh38
Lab
  • 227AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
files.read_length!
  • 36
BIOSAMPLE
ASSAY

229 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
skeletal muscle tissue13
primary cell
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the cerebellum1
cell line
HepG24
Panc11
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