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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
11
DNase-seq
Assay category
82
DNA binding
11
DNA accessibility
Target of assay
45
transcription factor
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
21
August, 2017
9
November, 2018
3
October, 2017
Available data
264
fastq
258
bam
215
bigWig
200
bed narrowPeak
148
bigBed narrowPeak
93
bed broadPeak
84
bigBed broadPeak
39
tagAlign
37
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
Organism
87
Homo sapiens
Biosample type
54
cell line
20
primary cell
18
tissue
1
in vitro differentiated cells
Organ
57
liver
11
brain
8
pancreas
4
epithelium
4
vasculature
2
blood vessel
2
connective tissue
1
adipose tissue
1
spleen
Project
93
AMP
Genome assembly (visualization)
93
hg19
81
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
cell line
HepG2
54
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
tissue
pancreas
6
brain
3
2
body of pancreas
2
liver
2
omental fat pad
1
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in vitro differentiated cells
adipocyte
1
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