Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
114
ChIP-seq
Assay category
196
DNA accessibility
114
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
39
August, 2017
9
October, 2019
3
October, 2017
1
November, 2018
1
November, 2020
Available data
3019
bam
2851
bigWig
1637
bed narrowPeak
1454
tsv
903
fastq
895
bigBed narrowPeak
398
tagAlign
310
bed broadPeak
275
bigBed broadPeak
265
bed bed3+
155
txt
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
23
hic
22
bedpe bed3+
18
zippedFastqFolder
12
bed bed3
7
bed bedgraph
6
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
304
Homo sapiens
Biosample type
203
tissue
59
cell line
48
primary cell
Organ
78
kidney
60
liver
46
brain
46
musculature of body
36
limb
30
heart
22
epithelium
18
ureter
17
pancreas
17
vasculature
13
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
Project
310
AMP
Genome assembly (visualization)
287
hg19
272
GRCh38
Lab
310
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
310 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
13
3
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
See all biosamples
Download