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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
28
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
187
June, 2019
21
August, 2017
9
October, 2019
8
November, 2018
6
November, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2590
bam
2477
bigWig
1502
tsv
1294
bed narrowPeak
660
bigBed narrowPeak
450
fastq
359
tagAlign
234
bed broadPeak
222
bed bed3+
206
bigBed broadPeak
161
txt
134
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
234
Homo sapiens
Biosample type
203
tissue
29
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
37
brain
36
limb
30
heart
18
epithelium
18
ureter
15
pancreas
13
vasculature
11
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
234
AMP
Genome assembly (visualization)
210
GRCh38
210
hg19
Lab
232
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.run_type!
single-ended
BIOSAMPLE
ASSAY
234 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
13
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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