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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 28ChIP-seq
  • 2ATAC-seq
Assay category
  • 206DNA accessibility
  • 28DNA binding
Target of assay
  • 28histone
  • 28histone modification
  • 16broad histone mark
  • 12narrow histone mark
Date released
  • 187June, 2019
  • 21August, 2017
  • 9October, 2019
  • 8November, 2018
  • 6November, 2017
  • 1March, 2019
  • 1November, 2020
  • 1October, 2017
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 234Homo sapiens
Biosample type
  • 203tissue
  • 29primary cell
  • 1cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 46musculature of body
  • 37brain
  • 36limb
  • 30heart
  • 18epithelium
  • 18ureter
  • 15pancreas
  • 13vasculature
  • 11blood vessel
  • 10connective tissue
  • 5liver
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 234AMP
Genome assembly (visualization)
  • 210GRCh38
  • 210hg19
Lab
  • 232AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

234 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain13
kidney13
muscle of leg13
primary cell
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the cerebellum1
cell line
Panc11
in vitro differentiated cells
adipocyte1
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