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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 86ChIP-seq
  • 2DNase-seq
Assay category
  • 86DNA binding
  • 2DNA accessibility
Target of assay
  • 49transcription factor
  • 37histone
  • 37histone modification
  • 20broad histone mark
  • 17narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 64November, 2017
  • 20August, 2017
  • 3October, 2017
  • 1November, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 82Homo sapiens
Biosample type
  • 58cell line
  • 20primary cell
  • 10tissue
Organ
  • 58liver
  • 10brain
  • 6pancreas
  • 4epithelium
  • 4vasculature
  • 2blood vessel
Project
  • 88AMP
Genome assembly (visualization)
  • 88hg19
  • 72GRCh38
Lab
  • 88AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

88 results

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ChIP-seq
DNase-seq
cell line
HepG258
primary cell
skeletal muscle myoblast131
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
tissue
pancreas6
brain31
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