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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
DNase-seq
97
ChIP-seq
2
ATAC-seq
Assay category
169
DNA accessibility
97
DNA binding
Target of assay
51
histone
51
histone modification
46
transcription factor
30
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
58
November, 2017
41
August, 2017
October, 2019
7
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2982
bam
2816
bigWig
1559
tsv
1436
bed narrowPeak
1337
fastq
845
bigBed narrowPeak
269
tagAlign
266
bed broadPeak
238
bigBed broadPeak
230
bed bed3+
153
zippedFastqFolder
104
txt
34
bed bedMethyl
34
bigBed bedMethyl
20
bedpe bed3+
18
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
260
Homo sapiens
Biosample type
173
tissue
58
cell line
34
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
brain
46
musculature of body
32
limb
30
heart
20
pancreas
18
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
266
AMP
Genome assembly (visualization)
252
hg19
229
GRCh38
Lab
264
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
266 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 27 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 12 more…
in vitro differentiated cells
adipocyte
1
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