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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
DNase-seq
2
ATAC-seq
2
ChIP-seq
Assay category
204
DNA accessibility
2
DNA binding
Target of assay
histone
42
histone modification
26
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
183
June, 2019
November, 2017
9
November, 2018
7
October, 2019
4
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2285
bam
2027
bigWig
1589
tsv
696
bed narrowPeak
654
fastq
407
bigBed narrowPeak
244
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
161
txt
66
tagAlign
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
2
ibed
1
bedpe
1
tar
1
vcf
Organism
206
Homo sapiens
Biosample type
175
tissue
29
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
9
connective tissue
9
pancreas
5
liver
4
artery
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
206
AMP
Genome assembly (visualization)
203
GRCh38
182
hg19
Lab
204
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
month_released!
November, 2017
organ_slims!
eye
target.investigated_as!
histone
BIOSAMPLE
ASSAY
206 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 17 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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