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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
76
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
76
DNA binding
Target of assay
62
histone
62
histone modification
48
transcription factor
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
58
November, 2017
19
August, 2017
9
November, 2018
3
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2879
bam
2625
bigWig
1526
tsv
1309
bed narrowPeak
1068
fastq
762
bigBed narrowPeak
275
bed broadPeak
258
bigBed broadPeak
250
bed bed3+
245
tagAlign
161
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
273
Homo sapiens
Biosample type
188
tissue
51
cell line
35
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
pancreas
blood vessel
10
connective tissue
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
275
AMP
Genome assembly (visualization)
252
hg19
250
GRCh38
Lab
273
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
organ_slims!
blood vessel
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
275 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
50
Panc1
1
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
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