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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
101
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
101
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
61
November, 2017
39
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3109
bam
2908
bigWig
1580
bed narrowPeak
1532
tsv
1265
fastq
871
bigBed narrowPeak
392
tagAlign
298
bed broadPeak
261
bigBed broadPeak
256
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
4
bed bedgraph
3
cool
3
hdf5
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
292
Homo sapiens
Biosample type
208
tissue
55
cell line
34
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
18
ureter
vasculature
12
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
298
AMP
Genome assembly (visualization)
275
hg19
262
GRCh38
Lab
296
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
Struan F.A. Grant, CHOP
organ_slims!
vasculature
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
298 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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