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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
47
ChIP-seq
1
ATAC-seq
Assay category
196
DNA accessibility
47
DNA binding
Target of assay
61
histone
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
45
November, 2017
9
November, 2018
4
August, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2493
bam
2212
bigWig
1531
tsv
1123
fastq
899
bed narrowPeak
634
bigBed narrowPeak
243
bed broadPeak
242
bigBed broadPeak
235
bed bed3+
161
txt
153
zippedFastqFolder
71
tagAlign
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
243
Homo sapiens
Biosample type
172
tissue
45
cell line
25
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
vasculature
10
blood vessel
9
connective tissue
8
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
243
AMP
Genome assembly (visualization)
228
GRCh38
220
hg19
Lab
242
AMP-T2D consortium
1
Mark McCarthy, Oxford
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
lab.title!
Stephen Parker, UMich
organ_slims!
thymus
vasculature
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
243 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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