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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
40
ChIP-seq
2
ATAC-seq
Assay category
208
DNA accessibility
40
DNA binding
Target of assay
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
40
November, 2017
9
November, 2018
7
October, 2019
2
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2505
bam
2195
bigWig
1600
tsv
1040
fastq
862
bed narrowPeak
558
bigBed narrowPeak
248
bed broadPeak
246
bed bed3+
246
bigBed broadPeak
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
248
Homo sapiens
Biosample type
178
tissue
41
cell line
28
primary cell
1
in vitro differentiated cells
Organ
78
kidney
45
liver
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
248
AMP
Genome assembly (visualization)
235
GRCh38
224
hg19
Lab
246
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
histone
BIOSAMPLE
ASSAY
248 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
40
Panc1
1
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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