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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
DNase-seq
12
ChIP-seq
2
ATAC-seq
Assay category
40
DNA accessibility
12
DNA binding
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
36
June, 2019
12
August, 2017
October, 2019
2
November, 2018
1
March, 2019
1
October, 2017
Available data
682
bam
615
bigWig
437
fastq
381
tsv
251
bed narrowPeak
122
bigBed narrowPeak
80
zippedFastqFolder
59
bed bed3+
52
bed broadPeak
38
bigBed broadPeak
19
tagAlign
7
bed bedMethyl
7
bedpe bed3+
7
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bedpe
Organism
46
Homo sapiens
Biosample type
52
tissue
Organ
78
kidney
63
liver
47
brain
46
musculature of body
32
limb
30
heart
20
pancreas
18
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
52
AMP
Genome assembly (visualization)
49
hg19
45
GRCh38
Lab
50
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
April, 2018
October, 2019
BIOSAMPLE
ASSAY
52 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
muscle of arm
17
muscle of leg
13
islet of Langerhans
6
2
pancreas
2
6
body of pancreas
4
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