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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 75ChIP-seq
  • 2ATAC-seq
Assay category
  • 206DNA accessibility
  • 75DNA binding
Target of assay
  • 47transcription factor
  • 28histone
  • 28histone modification
  • 14broad histone mark
  • 14narrow histone mark
  • 7RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 70November, 2017
  • August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3110bam
  • 2897bigWig
  • 1675bed narrowPeak
  • 1511tsv
  • 1071fastq
  • 1000bigBed narrowPeak
  • 313tagAlign
  • 281bed broadPeak
  • 270bigBed broadPeak
  • 240bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 281Homo sapiens
Biosample type
  • 187tissue
  • 59cell line
  • 35primary cell
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9pancreas
  • 8connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 281AMP
Genome assembly (visualization)
  • 263GRCh38
  • 257hg19
Lab
  • 279AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

281 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
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