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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
27
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
27
DNA binding
Target of assay
50
histone
50
histone modification
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
184
June, 2019
18
August, 2017
10
November, 2017
7
October, 2019
5
November, 2018
2
October, 2017
1
March, 2019
1
November, 2020
Available data
1889
bam
1702
bigWig
1010
tsv
964
bed narrowPeak
725
fastq
453
bigBed narrowPeak
243
bed bed3+
228
bed broadPeak
212
bigBed broadPeak
179
tagAlign
161
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
21
hic
20
bedpe bed3+
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
226
Homo sapiens
Biosample type
187
tissue
39
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
pancreas
11
blood vessel
10
connective tissue
4
artery
4
eye
adipose tissue
2
nerve
2
vein
1
spleen
Project
228
AMP
Genome assembly (visualization)
217
GRCh38
204
hg19
Lab
226
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
February, 2018
organ_slims!
adipose tissue
liver
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
228 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 41 more…
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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