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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
74
ChIP-seq
Assay category
199
DNA accessibility
74
DNA binding
Target of assay
53
histone
53
histone modification
49
transcription factor
broad histone mark
25
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
60
November, 2017
15
August, 2017
7
November, 2018
6
October, 2019
1
November, 2020
1
October, 2017
Available data
2364
bam
2169
bigWig
1243
bed narrowPeak
1168
tsv
790
fastq
739
bigBed narrowPeak
273
bed broadPeak
262
bigBed broadPeak
240
tagAlign
238
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
273
Homo sapiens
Biosample type
181
tissue
50
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
pancreas
11
blood vessel
10
connective tissue
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
273
AMP
Genome assembly (visualization)
252
hg19
251
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
month_released!
February, 2018
organ_slims!
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
273 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
50
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
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