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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114ChIP-seq
  • 19DNase-seq
  • 2ATAC-seq
Assay category
  • 114DNA binding
  • 21DNA accessibility
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • June, 2019
  • 70November, 2017
  • 41August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3174bam
  • 2959bigWig
  • 1607bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 832bigBed narrowPeak
  • 398tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 135bed broadPeak
  • 98bigBed broadPeak
  • 86bed bed3+
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 129Homo sapiens
Biosample type
  • 59cell line
  • 50tissue
  • 25primary cell
  • 1in vitro differentiated cells
Organ
  • 61liver
  • 17brain
  • 17pancreas
  • 13musculature of body
  • 10vasculature
  • 8blood vessel
  • 8epithelium
  • 4connective tissue
  • 4limb
  • 4vein
  • 2adipose tissue
  • 2artery
  • 2nerve
  • 1spleen
Project
  • 135AMP
Genome assembly (visualization)
  • 134hg19
  • 95GRCh38
Lab
  • 133AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

135 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG258
Panc11
tissue
skeletal muscle tissue13
islet of Langerhans62
pancreas6
brain32
body of pancreas2
primary cell
skeletal muscle myoblast131
endothelial cell of umbilical vein22
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
in vitro differentiated cells
adipocyte1
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