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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 44ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 44DNA binding
Target of assay
  • 42histone
  • 42histone modification
  • 26broad histone mark
  • 16narrow histone mark
  • 2RNA binding protein
  • 2transcription factor
  • 1chromatin remodeller
Date released
  • 187June, 2019
  • November, 2017
  • 41August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3000bam
  • 2835bigWig
  • 1600tsv
  • 1504bed narrowPeak
  • 1034fastq
  • 730bigBed narrowPeak
  • 320tagAlign
  • 273bed bed3+
  • 252bed broadPeak
  • 221bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 246Homo sapiens
Biosample type
  • 207tissue
  • 43primary cell
  • 1cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 46musculature of body
  • 36limb
  • 35brain
  • 30heart
  • 21pancreas
  • 18epithelium
  • 18ureter
  • 13vasculature
  • 11blood vessel
  • 10connective tissue
  • 5liver
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 252AMP
Genome assembly (visualization)
  • 228hg19
  • 227GRCh38
Lab
  • 250AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 2inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

252 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
cell line
Panc11
in vitro differentiated cells
adipocyte1
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