Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
104
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
104
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
63
November, 2017
37
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2706
bam
2503
bigWig
1647
bed narrowPeak
1177
fastq
1121
tsv
927
bigBed narrowPeak
376
tagAlign
303
bed broadPeak
267
bigBed broadPeak
244
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
297
Homo sapiens
Biosample type
210
tissue
55
cell line
38
primary cell
Organ
78
kidney
59
liver
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
18
ureter
15
vasculature
12
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
303
AMP
Genome assembly (visualization)
280
hg19
266
GRCh38
Lab
301
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
November, 2020
organ_slims!
connective tissue
small intestine
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
303 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 14 more…
See all biosamples
Download