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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
DNase-seq
25
ChIP-seq
1
ATAC-seq
Assay category
41
DNA accessibility
25
DNA binding
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
Date released
37
June, 2019
25
August, 2017
2
November, 2018
1
March, 2019
October, 2017
1
October, 2019
Available data
742
bam
686
bigWig
468
fastq
426
tsv
270
bed narrowPeak
138
bigBed narrowPeak
80
zippedFastqFolder
66
bed broadPeak
63
bed bed3+
40
bigBed broadPeak
34
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
9
bedpe bed3+
9
hic
7
txt
3
cool
1
bedpe
1
hdf5
Organism
60
Homo sapiens
Biosample type
64
tissue
1
cell line
1
primary cell
Organ
78
kidney
63
liver
46
musculature of body
44
brain
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
66
AMP
Genome assembly (visualization)
63
hg19
46
GRCh38
Lab
65
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
October, 2017
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
13
pancreas
2
6
islet of Langerhans
6
1
+ See 3 more…
cell line
Panc1
1
primary cell
skeletal muscle cell
1
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