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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
47
ChIP-seq
2
ATAC-seq
Assay category
187
DNA accessibility
47
DNA binding
Target of assay
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
45
November, 2017
9
November, 2018
October, 2019
4
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2318
bam
2059
bigWig
1431
tsv
923
fastq
887
bed narrowPeak
596
bigBed narrowPeak
234
bed broadPeak
232
bigBed broadPeak
224
bed bed3+
161
txt
73
zippedFastqFolder
65
tagAlign
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
234
Homo sapiens
Biosample type
174
tissue
44
cell line
15
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
35
brain
33
musculature of body
32
limb
30
heart
18
ureter
epithelium
9
connective tissue
9
vasculature
8
pancreas
6
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
234
AMP
Genome assembly (visualization)
219
GRCh38
216
hg19
Lab
232
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
October, 2019
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
234 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
44
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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