Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199DNase-seq
  • 112ChIP-seq
  • 2ATAC-seq
Assay category
  • 201DNA accessibility
  • 112DNA binding
Target of assay
  • 63histone
  • 63histone modification
  • 49transcription factor
  • 34broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 70November, 2017
  • 41August, 2017
  • 9November, 2018
  • October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3142bam
  • 2962bigWig
  • 1628bed narrowPeak
  • 1584tsv
  • 1358fastq
  • 972bigBed narrowPeak
  • 349tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 265bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 307Homo sapiens
Biosample type
  • 209tissue
  • 58cell line
  • 45primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 32limb
  • 30heart
  • 20pancreas
  • 18epithelium
  • 18ureter
  • 11vasculature
  • 10connective tissue
  • 7blood vessel
  • 4eye
  • 3adipose tissue
  • 2artery
  • 1spleen
Project
  • 313AMP
Genome assembly (visualization)
  • 289hg19
  • 275GRCh38
Lab
  • 311AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

313 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG258
primary cell
skeletal muscle myoblast113
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego