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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 113ChIP-seq
  • 2ATAC-seq
Assay category
  • 206DNA accessibility
  • 113DNA binding
Target of assay
  • 64histone
  • 64histone modification
  • 49transcription factor
  • 36broad histone mark
  • 28narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 186June, 2019
  • 70November, 2017
  • 40August, 2017
  • 9October, 2019
  • 8November, 2018
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 2950bam
  • 2744bigWig
  • 1804bed narrowPeak
  • 1314fastq
  • 1199tsv
  • 1032bigBed narrowPeak
  • 390tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 267bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 313Homo sapiens
Biosample type
  • 210tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • adipose tissue
  • 2nerve
  • 1spleen
Project
  • 319AMP
Genome assembly (visualization)
  • 295hg19
  • 280GRCh38
Lab
  • 317AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • adipose tissue
BIOSAMPLE
ASSAY

319 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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