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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
98
ChIP-seq
Assay category
188
DNA accessibility
98
DNA binding
Target of assay
50
histone
50
histone modification
48
transcription factor
26
broad histone mark
24
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
178
June, 2019
68
November, 2017
29
August, 2017
7
November, 2018
3
October, 2017
1
November, 2020
Available data
2481
bam
2365
bigWig
1447
bed narrowPeak
1110
tsv
884
fastq
846
bigBed narrowPeak
373
tagAlign
286
bed broadPeak
263
bigBed broadPeak
231
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
14
bedpe bed3+
13
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
tagAlign bed3+
1
vcf
Organism
286
Homo sapiens
Biosample type
186
tissue
58
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
pancreas
18
ureter
17
vasculature
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
nerve
1
spleen
Project
286
AMP
Genome assembly (visualization)
266
hg19
255
GRCh38
Lab
286
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
nerve
pancreas
organ_slims!!
pancreas
BIOSAMPLE
ASSAY
286 results
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DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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