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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197DNase-seq
  • 110ChIP-seq
  • 2ATAC-seq
Assay category
  • 199DNA accessibility
  • 110DNA binding
Target of assay
  • 62histone
  • 62histone modification
  • 48transcription factor
  • 34broad histone mark
  • 28narrow histone mark
  • 8RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 182June, 2019
  • 68November, 2017
  • 41August, 2017
  • 9November, 2018
  • 4October, 2017
  • 3October, 2019
  • 1March, 2019
  • 1November, 2020
Available data
  • 3212bam
  • 3019bigWig
  • 1688bed narrowPeak
  • 1532tsv
  • 1355fastq
  • 963bigBed narrowPeak
  • 392tagAlign
  • 309bed broadPeak
  • 272bigBed broadPeak
  • 262bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3cool
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 303Homo sapiens
Biosample type
  • 208tissue
  • 59cell line
  • 41primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 309AMP
Genome assembly (visualization)
  • 286hg19
  • 271GRCh38
Lab
  • 307AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • blood vessel
BIOSAMPLE
ASSAY

309 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
astrocyte of the cerebellum12
cardiac fibroblast3
choroid plexus epithelial cell12
glomerular visceral epithelial cell2
in vitro differentiated cells
adipocyte1
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